Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs4392783 chr7:32805325 T/G 9.96E-5 500 31.43 31.57 32.1 KM Plot
THCA rs4407373 chr3:139255012 G/T 4.37E-10 502 31.5 33.8 19.32 KM Plot
THCA rs4426577 chr20:47245721 G/A 0 503 31.47 32.93 7.77 KM Plot
THCA rs4427056 chr7:16478891 G/C 3.68E-5 489 31.33 31.98 32.1 KM Plot
THCA rs4431002 chr20:47316585 C/T 3.98E-9 503 31.53 32.07 18.22 KM Plot
THCA rs4434052 chr20:47222499 G/A 0 502 31.53 32.1 6.78 KM Plot
THCA rs4442030 chr7:32805244 G/A 9.96E-5 500 31.43 31.57 32.1 KM Plot
THCA rs4455220 chr20:47335017 A/G 6.41E-9 503 31.47 32.9 18.22 KM Plot
THCA rs4487145 chr20:47249116 G/A 0 503 31.47 33.27 7.77 KM Plot
THCA rs4487146 chr20:47249170 G/A 0 503 31.47 33.27 7.77 KM Plot
THCA rs4513997 chr8:5030258 G/A 0 497 31.47 36.9 7.35 KM Plot
THCA rs4516495 chr20:47316482 A/G 1.53E-7 503 31.67 32.03 8.9 KM Plot
THCA rs4527260 chr20:47249200 A/G 0 503 31.47 33.27 7.77 KM Plot
THCA rs45510791 chr14:23549383 G/T 5.44E-15 498 31.7 32.35 12.97 KM Plot
THCA rs45511399 chr18:13825585 C/T 1.27E-5 501 31.42 33.4 50 KM Plot